STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCB_1Glycine betaine/carnitine/choline transport system permease protein OpuCB. (244 aa)    
Predicted Functional Partners:
osmF_1
Putative osmoprotectant uptake system substrate-binding protein OsmF precursor.
 
 0.992
opuBA
Choline transport ATP-binding protein OpuBA.
 
 0.988
osmF_2
Putative osmoprotectant uptake system substrate-binding protein OsmF precursor.
 
 
 0.978
opuBB_1
Choline transport system permease protein OpuBB.
 
  
0.934
opuBB_2
Choline transport system permease protein OpuBB.
 
  
0.724
KJL26828.1
Hypothetical protein.
 
     0.649
merA
Mercuric reductase.
 
   
 0.470
opuAA
Glycine betaine transport ATP-binding protein OpuAA.
  
 0.463
Your Current Organism:
Microbacterium foliorum
NCBI taxonomy Id: 104336
Other names: CIP 107137, DSM 12966, JCM 11569, LMG 19580, LMG:19580, M. foliorum, Microbacterium foliorum Behrendt et al. 2001, NBRC 103072, NRRL:B-24224, strain P 333/02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.