Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
araP_1 | araQ_1 | RN50_00303 | RN50_00304 | L-arabinose transport system permease protein AraP. | L-arabinose transport system permease protein AraQ. | 0.969 |
araP_1 | degA_1 | RN50_00303 | RN50_00305 | L-arabinose transport system permease protein AraP. | HTH-type transcriptional regulator DegA. | 0.773 |
araP_1 | yteT_1 | RN50_00303 | RN50_00306 | L-arabinose transport system permease protein AraP. | Putative oxidoreductase YteT precursor. | 0.699 |
araQ_1 | araP_1 | RN50_00304 | RN50_00303 | L-arabinose transport system permease protein AraQ. | L-arabinose transport system permease protein AraP. | 0.969 |
araQ_1 | degA_1 | RN50_00304 | RN50_00305 | L-arabinose transport system permease protein AraQ. | HTH-type transcriptional regulator DegA. | 0.773 |
araQ_1 | yteT_1 | RN50_00304 | RN50_00306 | L-arabinose transport system permease protein AraQ. | Putative oxidoreductase YteT precursor. | 0.626 |
araR | ccpA_1 | RN50_01248 | RN50_00638 | Arabinose metabolism transcriptional repressor. | Catabolite control protein A. | 0.700 |
araR | cytR_9 | RN50_01248 | RN50_03389 | Arabinose metabolism transcriptional repressor. | HTH-type transcriptional repressor CytR. | 0.668 |
araR | degA_1 | RN50_01248 | RN50_00305 | Arabinose metabolism transcriptional repressor. | HTH-type transcriptional regulator DegA. | 0.701 |
araR | gltB_1 | RN50_01248 | RN50_02779 | Arabinose metabolism transcriptional repressor. | Glutamate synthase [NADPH] large chain. | 0.661 |
araR | ptsI_1 | RN50_01248 | RN50_00113 | Arabinose metabolism transcriptional repressor. | Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr). | 0.558 |
araR | rbsR_2 | RN50_01248 | RN50_00740 | Arabinose metabolism transcriptional repressor. | Ribose operon repressor. | 0.414 |
ccpA_1 | araR | RN50_00638 | RN50_01248 | Catabolite control protein A. | Arabinose metabolism transcriptional repressor. | 0.700 |
ccpA_1 | degA_1 | RN50_00638 | RN50_00305 | Catabolite control protein A. | HTH-type transcriptional regulator DegA. | 0.771 |
ccpA_1 | gltB_1 | RN50_00638 | RN50_02779 | Catabolite control protein A. | Glutamate synthase [NADPH] large chain. | 0.661 |
ccpA_1 | ptsI_1 | RN50_00638 | RN50_00113 | Catabolite control protein A. | Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr). | 0.558 |
ccpA_1 | rbsR_2 | RN50_00638 | RN50_00740 | Catabolite control protein A. | Ribose operon repressor. | 0.642 |
cytR_1 | degA_1 | RN50_00127 | RN50_00305 | HTH-type transcriptional repressor CytR. | HTH-type transcriptional regulator DegA. | 0.773 |
cytR_1 | gltB_1 | RN50_00127 | RN50_02779 | HTH-type transcriptional repressor CytR. | Glutamate synthase [NADPH] large chain. | 0.661 |
cytR_1 | ptsI_1 | RN50_00127 | RN50_00113 | HTH-type transcriptional repressor CytR. | Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr). | 0.558 |
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