STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykoD_1Putative HMP/thiamine import ATP-binding protein YkoD. (587 aa)    
Predicted Functional Partners:
ykoC
Putative HMP/thiamine permease protein YkoC.
 
 0.979
KJL26254.1
ABC-type cobalt transport system, permease component.
 
    0.935
ecfT
Energy-coupling factor transporter transmembrane protein EcfT.
 
 0.824
viuB_1
Vibriobactin utilization protein ViuB.
       0.766
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
    0.622
KJL26258.1
ABC-type cobalt transport system, permease component.
  
    0.575
ykoE
Putative HMP/thiamine permease protein YkoE.
 
    0.574
bioN
Energy-coupling factor transporter transmembrane protein BioN.
 
 
 0.569
thiD
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
  
 0.510
gsiA_4
Glutathione import ATP-binding protein GsiA.
 
   
0.424
Your Current Organism:
Microbacterium foliorum
NCBI taxonomy Id: 104336
Other names: CIP 107137, DSM 12966, JCM 11569, LMG 19580, LMG:19580, M. foliorum, Microbacterium foliorum Behrendt et al. 2001, NBRC 103072, NRRL:B-24224, strain P 333/02
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