Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL22633.1 | KJL25095.1 | RN50_01311 | RN50_00553 | Long-chain-fatty-acid--CoA ligase FadD15. | Long-chain-fatty-acid--CoA ligase FadD15. | 0.822 |
KJL22633.1 | fadB | RN50_01311 | RN50_02685 | Long-chain-fatty-acid--CoA ligase FadD15. | Fatty acid oxidation complex subunit alpha. | 0.411 |
KJL22633.1 | fadD_1 | RN50_01311 | RN50_00455 | Long-chain-fatty-acid--CoA ligase FadD15. | Long-chain-fatty-acid--CoA ligase. | 0.829 |
KJL22633.1 | fadD_2 | RN50_01311 | RN50_02889 | Long-chain-fatty-acid--CoA ligase FadD15. | Long-chain-fatty-acid--CoA ligase. | 0.830 |
KJL25095.1 | KJL22633.1 | RN50_00553 | RN50_01311 | Long-chain-fatty-acid--CoA ligase FadD15. | Long-chain-fatty-acid--CoA ligase FadD15. | 0.822 |
KJL25095.1 | fadB | RN50_00553 | RN50_02685 | Long-chain-fatty-acid--CoA ligase FadD15. | Fatty acid oxidation complex subunit alpha. | 0.411 |
KJL25095.1 | fadD_1 | RN50_00553 | RN50_00455 | Long-chain-fatty-acid--CoA ligase FadD15. | Long-chain-fatty-acid--CoA ligase. | 0.831 |
KJL25095.1 | fadD_2 | RN50_00553 | RN50_02889 | Long-chain-fatty-acid--CoA ligase FadD15. | Long-chain-fatty-acid--CoA ligase. | 0.833 |
acpP | cypC | RN50_02181 | RN50_01761 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Fatty-acid peroxygenase. | 0.863 |
acpP | fadB | RN50_02181 | RN50_02685 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Fatty acid oxidation complex subunit alpha. | 0.460 |
acpP | fadD_1 | RN50_02181 | RN50_00455 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Long-chain-fatty-acid--CoA ligase. | 0.703 |
acpP | fadD_2 | RN50_02181 | RN50_02889 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Long-chain-fatty-acid--CoA ligase. | 0.703 |
acpP | rplB | RN50_02181 | RN50_01447 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.576 |
acpP | rplC | RN50_02181 | RN50_01450 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.883 |
acpP | rplM | RN50_02181 | RN50_00999 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.946 |
cypC | acpP | RN50_01761 | RN50_02181 | Fatty-acid peroxygenase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.863 |
cypC | fadD_1 | RN50_01761 | RN50_00455 | Fatty-acid peroxygenase. | Long-chain-fatty-acid--CoA ligase. | 0.721 |
cypC | fadD_2 | RN50_01761 | RN50_02889 | Fatty-acid peroxygenase. | Long-chain-fatty-acid--CoA ligase. | 0.721 |
cypC | rplB | RN50_01761 | RN50_01447 | Fatty-acid peroxygenase. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.651 |
cypC | rplC | RN50_01761 | RN50_01450 | Fatty-acid peroxygenase. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.644 |
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