Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL24360.1 | desK_1 | RN50_00709 | RN50_00708 | ABC-2 family transporter protein. | Sensor histidine kinase DesK. | 0.904 |
KJL24360.1 | vraR_1 | RN50_00709 | RN50_00707 | ABC-2 family transporter protein. | Response regulator protein VraR. | 0.799 |
KJL24360.1 | ybhF_1 | RN50_00709 | RN50_00710 | ABC-2 family transporter protein. | Putative ABC transporter ATP-binding protein YbhF. | 0.959 |
desK_1 | KJL24360.1 | RN50_00708 | RN50_00709 | Sensor histidine kinase DesK. | ABC-2 family transporter protein. | 0.904 |
desK_1 | desK_5 | RN50_00708 | RN50_02428 | Sensor histidine kinase DesK. | Sensor histidine kinase DesK. | 0.926 |
desK_1 | desK_6 | RN50_00708 | RN50_02439 | Sensor histidine kinase DesK. | Sensor histidine kinase DesK. | 0.731 |
desK_1 | liaR_5 | RN50_00708 | RN50_02205 | Sensor histidine kinase DesK. | Transcriptional regulatory protein LiaR. | 0.740 |
desK_1 | nreC_1 | RN50_00708 | RN50_01968 | Sensor histidine kinase DesK. | Oxygen regulatory protein NreC. | 0.734 |
desK_1 | vraR_1 | RN50_00708 | RN50_00707 | Sensor histidine kinase DesK. | Response regulator protein VraR. | 0.996 |
desK_1 | vraR_2 | RN50_00708 | RN50_00854 | Sensor histidine kinase DesK. | Response regulator protein VraR. | 0.745 |
desK_1 | vraR_3 | RN50_00708 | RN50_02354 | Sensor histidine kinase DesK. | Response regulator protein VraR. | 0.734 |
desK_1 | vraR_4 | RN50_00708 | RN50_02427 | Sensor histidine kinase DesK. | Response regulator protein VraR. | 0.980 |
desK_1 | ybhF_1 | RN50_00708 | RN50_00710 | Sensor histidine kinase DesK. | Putative ABC transporter ATP-binding protein YbhF. | 0.867 |
desK_5 | desK_1 | RN50_02428 | RN50_00708 | Sensor histidine kinase DesK. | Sensor histidine kinase DesK. | 0.926 |
desK_5 | liaR_5 | RN50_02428 | RN50_02205 | Sensor histidine kinase DesK. | Transcriptional regulatory protein LiaR. | 0.634 |
desK_5 | nreC_1 | RN50_02428 | RN50_01968 | Sensor histidine kinase DesK. | Oxygen regulatory protein NreC. | 0.595 |
desK_5 | vraR_1 | RN50_02428 | RN50_00707 | Sensor histidine kinase DesK. | Response regulator protein VraR. | 0.974 |
desK_5 | vraR_2 | RN50_02428 | RN50_00854 | Sensor histidine kinase DesK. | Response regulator protein VraR. | 0.571 |
desK_5 | vraR_3 | RN50_02428 | RN50_02354 | Sensor histidine kinase DesK. | Response regulator protein VraR. | 0.594 |
desK_5 | vraR_4 | RN50_02428 | RN50_02427 | Sensor histidine kinase DesK. | Response regulator protein VraR. | 0.995 |
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