STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapH_12,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. (619 aa)    
Predicted Functional Partners:
slcC
(S)-sulfolactate dehydrogenase.
 
     0.823
epsL
Putative sugar transferase EpsL.
  
  
 0.774
lacF_9
Lactose transport system permease protein LacF.
       0.773
araQ_6
L-arabinose transport system permease protein AraQ.
       0.773
KJL23083.1
Hypothetical protein.
       0.773
ugpB
Sn-glycerol-3-phosphate-binding periplasmic protein UgpB precursor.
 
     0.619
aroE_1
Shikimate dehydrogenase.
  
    0.605
KJL19298.1
Colanic acid biosynthesis protein.
 
  
 0.594
legI
N,N'-diacetyllegionaminic acid synthase.
  
  
 0.566
KJL24168.1
Putative ABC transporter-binding protein precursor.
  
     0.491
Your Current Organism:
Microbacterium foliorum
NCBI taxonomy Id: 104336
Other names: CIP 107137, DSM 12966, JCM 11569, LMG 19580, LMG:19580, M. foliorum, Microbacterium foliorum Behrendt et al. 2001, NBRC 103072, NRRL:B-24224, strain P 333/02
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