Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL20266.1 | atsA | RN50_02111 | RN50_02554 | 3-ketoacyl-(acyl-carrier-protein) reductase. | Arylsulfatase. | 0.530 |
KJL20266.1 | fabD | RN50_02111 | RN50_02179 | 3-ketoacyl-(acyl-carrier-protein) reductase. | Malonyl CoA-acyl carrier protein transacylase. | 0.459 |
KJL20266.1 | fabF | RN50_02111 | RN50_02182 | 3-ketoacyl-(acyl-carrier-protein) reductase. | 3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.419 |
KJL20266.1 | glgC | RN50_02111 | RN50_02193 | 3-ketoacyl-(acyl-carrier-protein) reductase. | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. | 0.409 |
KJL20266.1 | lacC | RN50_02111 | RN50_00180 | 3-ketoacyl-(acyl-carrier-protein) reductase. | Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. | 0.454 |
KJL20266.1 | upp | RN50_02111 | RN50_02398 | 3-ketoacyl-(acyl-carrier-protein) reductase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.812 |
atsA | KJL20266.1 | RN50_02554 | RN50_02111 | Arylsulfatase. | 3-ketoacyl-(acyl-carrier-protein) reductase. | 0.530 |
atsA | glgC | RN50_02554 | RN50_02193 | Arylsulfatase. | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. | 0.793 |
fabD | KJL20266.1 | RN50_02179 | RN50_02111 | Malonyl CoA-acyl carrier protein transacylase. | 3-ketoacyl-(acyl-carrier-protein) reductase. | 0.459 |
fabD | fabF | RN50_02179 | RN50_02182 | Malonyl CoA-acyl carrier protein transacylase. | 3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.999 |
fabF | KJL20266.1 | RN50_02182 | RN50_02111 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 3-ketoacyl-(acyl-carrier-protein) reductase. | 0.419 |
fabF | fabD | RN50_02182 | RN50_02179 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | Malonyl CoA-acyl carrier protein transacylase. | 0.999 |
glgC | KJL20266.1 | RN50_02193 | RN50_02111 | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. | 3-ketoacyl-(acyl-carrier-protein) reductase. | 0.409 |
glgC | atsA | RN50_02193 | RN50_02554 | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. | Arylsulfatase. | 0.793 |
lacC | KJL20266.1 | RN50_00180 | RN50_02111 | Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. | 3-ketoacyl-(acyl-carrier-protein) reductase. | 0.454 |
upp | KJL20266.1 | RN50_02398 | RN50_02111 | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 3-ketoacyl-(acyl-carrier-protein) reductase. | 0.812 |