Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL20275.1 | betI_7 | RN50_02120 | RN50_02119 | DoxX. | HTH-type transcriptional regulator BetI. | 0.697 |
KJL20275.1 | tfdB | RN50_02120 | RN50_02118 | DoxX. | 2,4-dichlorophenol 6-monooxygenase. | 0.515 |
betI_7 | KJL20275.1 | RN50_02119 | RN50_02120 | HTH-type transcriptional regulator BetI. | DoxX. | 0.697 |
betI_7 | tfdB | RN50_02119 | RN50_02118 | HTH-type transcriptional regulator BetI. | 2,4-dichlorophenol 6-monooxygenase. | 0.578 |
cypC | tfdB | RN50_01761 | RN50_02118 | Fatty-acid peroxygenase. | 2,4-dichlorophenol 6-monooxygenase. | 0.457 |
idi | tfdB | RN50_00155 | RN50_02118 | Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). | 2,4-dichlorophenol 6-monooxygenase. | 0.478 |
ribD | tfdB | RN50_00496 | RN50_02118 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 2,4-dichlorophenol 6-monooxygenase. | 0.406 |
tfdB | KJL20275.1 | RN50_02118 | RN50_02120 | 2,4-dichlorophenol 6-monooxygenase. | DoxX. | 0.515 |
tfdB | betI_7 | RN50_02118 | RN50_02119 | 2,4-dichlorophenol 6-monooxygenase. | HTH-type transcriptional regulator BetI. | 0.578 |
tfdB | cypC | RN50_02118 | RN50_01761 | 2,4-dichlorophenol 6-monooxygenase. | Fatty-acid peroxygenase. | 0.457 |
tfdB | idi | RN50_02118 | RN50_00155 | 2,4-dichlorophenol 6-monooxygenase. | Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.478 |
tfdB | ribD | RN50_02118 | RN50_00496 | 2,4-dichlorophenol 6-monooxygenase. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.406 |