STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narX_3Nitrate/nitrite sensor protein NarX. (419 aa)    
Predicted Functional Partners:
liaR_5
Transcriptional regulatory protein LiaR.
 
 0.963
nreC_1
Oxygen regulatory protein NreC.
 
 0.843
liaR_4
Transcriptional regulatory protein LiaR.
 
 0.843
vraR_3
Response regulator protein VraR.
 
 0.843
vraR_2
Response regulator protein VraR.
 
 0.842
liaR_7
Transcriptional regulatory protein LiaR.
 
 0.841
nreC_2
Oxygen regulatory protein NreC.
 
 0.840
liaR_6
Transcriptional regulatory protein LiaR.
 
 0.839
liaR_1
Transcriptional regulatory protein LiaR.
 
 0.837
degU_2
Transcriptional regulatory protein DegU.
 
 0.837
Your Current Organism:
Microbacterium foliorum
NCBI taxonomy Id: 104336
Other names: CIP 107137, DSM 12966, JCM 11569, LMG 19580, LMG:19580, M. foliorum, Microbacterium foliorum Behrendt et al. 2001, NBRC 103072, NRRL:B-24224, strain P 333/02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.