Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL20120.1 | KJL20121.1 | RN50_02299 | RN50_02300 | Hypothetical protein. | Hypothetical protein. | 0.773 |
KJL20120.1 | czcO_2 | RN50_02299 | RN50_02301 | Hypothetical protein. | Putative oxidoreductase CzcO. | 0.655 |
KJL20120.1 | ybbD_1 | RN50_02299 | RN50_02297 | Hypothetical protein. | Putative lipoprotein YbbD precursor. | 0.578 |
KJL20120.1 | yhfK | RN50_02299 | RN50_02298 | Hypothetical protein. | Putative sugar epimerase YhfK. | 0.631 |
KJL20121.1 | KJL20120.1 | RN50_02300 | RN50_02299 | Hypothetical protein. | Hypothetical protein. | 0.773 |
KJL20121.1 | czcO_2 | RN50_02300 | RN50_02301 | Hypothetical protein. | Putative oxidoreductase CzcO. | 0.655 |
KJL20121.1 | ybbD_1 | RN50_02300 | RN50_02297 | Hypothetical protein. | Putative lipoprotein YbbD precursor. | 0.578 |
KJL20121.1 | yhfK | RN50_02300 | RN50_02298 | Hypothetical protein. | Putative sugar epimerase YhfK. | 0.631 |
KJL26052.1 | czcO_2 | RN50_00337 | RN50_02301 | Z1 domain protein. | Putative oxidoreductase CzcO. | 0.476 |
KJL26052.1 | rplQ | RN50_00337 | RN50_01421 | Z1 domain protein. | 50S ribosomal protein L17. | 0.418 |
KJL26052.1 | yicI | RN50_00337 | RN50_00744 | Z1 domain protein. | Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family. | 0.538 |
atpA | atpG | RN50_03112 | RN50_03111 | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
atpA | czcO_2 | RN50_03112 | RN50_02301 | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | Putative oxidoreductase CzcO. | 0.654 |
atpA | rplQ | RN50_03112 | RN50_01421 | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 50S ribosomal protein L17. | 0.797 |
atpG | atpA | RN50_03111 | RN50_03112 | ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.999 |
atpG | czcO_2 | RN50_03111 | RN50_02301 | ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | Putative oxidoreductase CzcO. | 0.527 |
atpG | rplQ | RN50_03111 | RN50_01421 | ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 50S ribosomal protein L17. | 0.808 |
czcD | czcO_2 | RN50_01075 | RN50_02301 | Cobalt-zinc-cadmium resistance protein CzcD. | Putative oxidoreductase CzcO. | 0.448 |
czcO_2 | KJL20120.1 | RN50_02301 | RN50_02299 | Putative oxidoreductase CzcO. | Hypothetical protein. | 0.655 |
czcO_2 | KJL20121.1 | RN50_02301 | RN50_02300 | Putative oxidoreductase CzcO. | Hypothetical protein. | 0.655 |
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