STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL19098.1Spermidine/putrescine ABC transporter membrane protein. (264 aa)    
Predicted Functional Partners:
sugB_8
Trehalose transport system permease protein SugB.
 
 
  0.998
KJL19096.1
Hypothetical protein.
 
 
  0.996
potA
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
 
 0.996
cysA_1
Sulfate/thiosulfate import ATP-binding protein CysA; Belongs to the ABC transporter superfamily.
  
  
 0.796
bioM
Biotin transport ATP-binding protein BioM.
   
    0.601
KJL19100.1
Hypothetical protein.
  
    0.553
KJL20092.1
ComEC family competence protein.
  
  
 0.496
KJL19095.1
Aminoalkylphosphonic acid N-acetyltransferase.
       0.491
hslR
Heat shock protein 15.
   
    0.400
Your Current Organism:
Microbacterium foliorum
NCBI taxonomy Id: 104336
Other names: CIP 107137, DSM 12966, JCM 11569, LMG 19580, LMG:19580, M. foliorum, Microbacterium foliorum Behrendt et al. 2001, NBRC 103072, NRRL:B-24224, strain P 333/02
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