STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degA_8HTH-type transcriptional regulator DegA. (347 aa)    
Predicted Functional Partners:
cytR_1
HTH-type transcriptional repressor CytR.
  
     0.773
rbsR_6
Ribose operon repressor.
  
     0.773
cytR_9
HTH-type transcriptional repressor CytR.
  
     0.772
ccpA_6
Catabolite control protein A.
  
     0.759
gltB_1
Glutamate synthase [NADPH] large chain.
    
 
 0.661
araR
Arabinose metabolism transcriptional repressor.
  
     0.655
rbsR_2
Ribose operon repressor.
  
     0.627
ptsI_1
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
   
 
 0.558
cycB
Cyclodextrin-binding protein precursor.
 
     0.502
lacF_16
Lactose transport system permease protein LacF.
 
     0.474
Your Current Organism:
Microbacterium foliorum
NCBI taxonomy Id: 104336
Other names: CIP 107137, DSM 12966, JCM 11569, LMG 19580, LMG:19580, M. foliorum, Microbacterium foliorum Behrendt et al. 2001, NBRC 103072, NRRL:B-24224, strain P 333/02
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