STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywqDTyrosine-protein kinase YwqD. (457 aa)    
Predicted Functional Partners:
epsL
Putative sugar transferase EpsL.
 
  
 0.997
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.952
wzxC
Lipopolysaccharide biosynthesis protein WzxC.
 
  
 0.921
legI
N,N'-diacetyllegionaminic acid synthase.
  
  
 0.793
KJL19296.1
Hypothetical protein.
 
  
 0.791
spk1
Serine/threonine-protein kinase PK-1.
   
 
 0.744
pknB
Serine/threonine-protein kinase PknB.
   
 
 0.744
KJL19299.1
Coenzyme F420-reducing hydrogenase subunit beta.
 
     0.675
KJL18191.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
 0.663
KJL19298.1
Colanic acid biosynthesis protein.
 
  
 0.655
Your Current Organism:
Microbacterium foliorum
NCBI taxonomy Id: 104336
Other names: CIP 107137, DSM 12966, JCM 11569, LMG 19580, LMG:19580, M. foliorum, Microbacterium foliorum Behrendt et al. 2001, NBRC 103072, NRRL:B-24224, strain P 333/02
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