Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL19371.1 | actP_2 | RN50_02656 | RN50_02655 | Hypothetical protein. | Cation/acetate symporter ActP. | 0.944 |
KJL19371.1 | lytR | RN50_02656 | RN50_02657 | Hypothetical protein. | Sensory transduction protein LytR. | 0.954 |
KJL19371.1 | vpr | RN50_02656 | RN50_02654 | Hypothetical protein. | Minor extracellular protease vpr precursor; Belongs to the peptidase S8 family. | 0.461 |
KJL19371.1 | yehU | RN50_02656 | RN50_02658 | Hypothetical protein. | Sensor histidine kinase YehU. | 0.957 |
actP_2 | KJL19371.1 | RN50_02655 | RN50_02656 | Cation/acetate symporter ActP. | Hypothetical protein. | 0.944 |
actP_2 | lytR | RN50_02655 | RN50_02657 | Cation/acetate symporter ActP. | Sensory transduction protein LytR. | 0.941 |
actP_2 | vpr | RN50_02655 | RN50_02654 | Cation/acetate symporter ActP. | Minor extracellular protease vpr precursor; Belongs to the peptidase S8 family. | 0.489 |
actP_2 | yehU | RN50_02655 | RN50_02658 | Cation/acetate symporter ActP. | Sensor histidine kinase YehU. | 0.946 |
lytR | KJL19371.1 | RN50_02657 | RN50_02656 | Sensory transduction protein LytR. | Hypothetical protein. | 0.954 |
lytR | actP_2 | RN50_02657 | RN50_02655 | Sensory transduction protein LytR. | Cation/acetate symporter ActP. | 0.941 |
lytR | proA | RN50_02657 | RN50_02318 | Sensory transduction protein LytR. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.499 |
lytR | vpr | RN50_02657 | RN50_02654 | Sensory transduction protein LytR. | Minor extracellular protease vpr precursor; Belongs to the peptidase S8 family. | 0.461 |
lytR | yehU | RN50_02657 | RN50_02658 | Sensory transduction protein LytR. | Sensor histidine kinase YehU. | 0.988 |
proA | lytR | RN50_02318 | RN50_02657 | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | Sensory transduction protein LytR. | 0.499 |
vpr | KJL19371.1 | RN50_02654 | RN50_02656 | Minor extracellular protease vpr precursor; Belongs to the peptidase S8 family. | Hypothetical protein. | 0.461 |
vpr | actP_2 | RN50_02654 | RN50_02655 | Minor extracellular protease vpr precursor; Belongs to the peptidase S8 family. | Cation/acetate symporter ActP. | 0.489 |
vpr | lytR | RN50_02654 | RN50_02657 | Minor extracellular protease vpr precursor; Belongs to the peptidase S8 family. | Sensory transduction protein LytR. | 0.461 |
vpr | yehU | RN50_02654 | RN50_02658 | Minor extracellular protease vpr precursor; Belongs to the peptidase S8 family. | Sensor histidine kinase YehU. | 0.461 |
yehU | KJL19371.1 | RN50_02658 | RN50_02656 | Sensor histidine kinase YehU. | Hypothetical protein. | 0.957 |
yehU | actP_2 | RN50_02658 | RN50_02655 | Sensor histidine kinase YehU. | Cation/acetate symporter ActP. | 0.946 |
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