Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL17661.1 | KJL17676.1 | RN50_02758 | RN50_02773 | Hypothetical protein. | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | 0.755 |
KJL17661.1 | KJL17677.1 | RN50_02758 | RN50_02774 | Hypothetical protein. | Hypothetical protein. | 0.569 |
KJL17676.1 | KJL17661.1 | RN50_02773 | RN50_02758 | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | Hypothetical protein. | 0.755 |
KJL17676.1 | KJL17677.1 | RN50_02773 | RN50_02774 | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | Hypothetical protein. | 0.800 |
KJL17676.1 | hisE | RN50_02773 | RN50_02769 | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | Phosphoribosyl-ATP pyrophosphatase. | 0.787 |
KJL17676.1 | hisF | RN50_02773 | RN50_02771 | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | Imidazole glycerol phosphate synthase subunit HisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. | 0.887 |
KJL17676.1 | hisG | RN50_02773 | RN50_02770 | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily. | 0.873 |
KJL17676.1 | hisI | RN50_02773 | RN50_02772 | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP. | 0.854 |
KJL17676.1 | lgt | RN50_02773 | RN50_02778 | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.722 |
KJL17676.1 | trpA | RN50_02773 | RN50_02777 | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.743 |
KJL17676.1 | trpB | RN50_02773 | RN50_02776 | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.743 |
KJL17676.1 | trpC | RN50_02773 | RN50_02775 | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.750 |
KJL17677.1 | KJL17661.1 | RN50_02774 | RN50_02758 | Hypothetical protein. | Hypothetical protein. | 0.569 |
KJL17677.1 | KJL17676.1 | RN50_02774 | RN50_02773 | Hypothetical protein. | Tryptophan-associated transmembrane protein (Trp-oprn-chp). | 0.800 |
KJL17677.1 | hisE | RN50_02774 | RN50_02769 | Hypothetical protein. | Phosphoribosyl-ATP pyrophosphatase. | 0.613 |
KJL17677.1 | hisF | RN50_02774 | RN50_02771 | Hypothetical protein. | Imidazole glycerol phosphate synthase subunit HisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. | 0.747 |
KJL17677.1 | hisG | RN50_02774 | RN50_02770 | Hypothetical protein. | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily. | 0.741 |
KJL17677.1 | hisI | RN50_02774 | RN50_02772 | Hypothetical protein. | Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP. | 0.730 |
KJL17677.1 | lgt | RN50_02774 | RN50_02778 | Hypothetical protein. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.842 |
KJL17677.1 | trpA | RN50_02774 | RN50_02777 | Hypothetical protein. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.854 |
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