Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL18001.1 | eccCa1_2 | RN50_03107 | RN50_03105 | Hypothetical protein. | ESX-1 secretion system protein EccCa1. | 0.571 |
KJL18001.1 | pstP_2 | RN50_03107 | RN50_03106 | Hypothetical protein. | PP2C-family Ser/Thr phosphatase. | 0.624 |
KJL18001.1 | rsmB | RN50_03107 | RN50_02767 | Hypothetical protein. | Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.502 |
eccCa1_2 | KJL18001.1 | RN50_03105 | RN50_03107 | ESX-1 secretion system protein EccCa1. | Hypothetical protein. | 0.571 |
eccCa1_2 | pstP_2 | RN50_03105 | RN50_03106 | ESX-1 secretion system protein EccCa1. | PP2C-family Ser/Thr phosphatase. | 0.620 |
fmt | pstP_2 | RN50_02766 | RN50_03106 | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | PP2C-family Ser/Thr phosphatase. | 0.688 |
fmt | rsmB | RN50_02766 | RN50_02767 | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.995 |
pknA | pknB | RN50_01660 | RN50_01659 | Serine/threonine-protein kinase PknA. | Serine/threonine-protein kinase PknB. | 0.902 |
pknA | pstP_2 | RN50_01660 | RN50_03106 | Serine/threonine-protein kinase PknA. | PP2C-family Ser/Thr phosphatase. | 0.865 |
pknA | spk1 | RN50_01660 | RN50_01314 | Serine/threonine-protein kinase PknA. | Serine/threonine-protein kinase PK-1. | 0.661 |
pknB | pknA | RN50_01659 | RN50_01660 | Serine/threonine-protein kinase PknB. | Serine/threonine-protein kinase PknA. | 0.902 |
pknB | pknK_1 | RN50_01659 | RN50_02624 | Serine/threonine-protein kinase PknB. | Serine/threonine-protein kinase PknK. | 0.674 |
pknB | pknK_2 | RN50_01659 | RN50_02640 | Serine/threonine-protein kinase PknB. | Serine/threonine-protein kinase PknK. | 0.669 |
pknB | pknL | RN50_01659 | RN50_00084 | Serine/threonine-protein kinase PknB. | Serine/threonine-protein kinase PknL. | 0.699 |
pknB | pstP_2 | RN50_01659 | RN50_03106 | Serine/threonine-protein kinase PknB. | PP2C-family Ser/Thr phosphatase. | 0.973 |
pknB | rsmB | RN50_01659 | RN50_02767 | Serine/threonine-protein kinase PknB. | Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.584 |
pknB | spk1 | RN50_01659 | RN50_01314 | Serine/threonine-protein kinase PknB. | Serine/threonine-protein kinase PK-1. | 0.587 |
pknK_1 | pknB | RN50_02624 | RN50_01659 | Serine/threonine-protein kinase PknK. | Serine/threonine-protein kinase PknB. | 0.674 |
pknK_1 | pstP_2 | RN50_02624 | RN50_03106 | Serine/threonine-protein kinase PknK. | PP2C-family Ser/Thr phosphatase. | 0.863 |
pknK_1 | spk1 | RN50_02624 | RN50_01314 | Serine/threonine-protein kinase PknK. | Serine/threonine-protein kinase PK-1. | 0.675 |
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