Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL18100.1 | lpqB | RN50_03207 | RN50_03204 | Hypothetical protein. | Lipoprotein LpqB precursor. | 0.724 |
KJL18100.1 | mtrA | RN50_03207 | RN50_03206 | Hypothetical protein. | DNA-binding response regulator MtrA. | 0.546 |
KJL18100.1 | mtrB | RN50_03207 | RN50_03205 | Hypothetical protein. | Sensor histidine kinase MtrB. | 0.679 |
KJL18100.1 | pyrE_2 | RN50_03207 | RN50_03203 | Hypothetical protein. | Orotate phosphoribosyltransferase. | 0.582 |
kdpE | mtrB | RN50_02065 | RN50_03205 | KDP operon transcriptional regulatory protein KdpE. | Sensor histidine kinase MtrB. | 0.717 |
lpqB | KJL18100.1 | RN50_03204 | RN50_03207 | Lipoprotein LpqB precursor. | Hypothetical protein. | 0.724 |
lpqB | mtrA | RN50_03204 | RN50_03206 | Lipoprotein LpqB precursor. | DNA-binding response regulator MtrA. | 0.809 |
lpqB | mtrB | RN50_03204 | RN50_03205 | Lipoprotein LpqB precursor. | Sensor histidine kinase MtrB. | 0.981 |
lpqB | pyrE_2 | RN50_03204 | RN50_03203 | Lipoprotein LpqB precursor. | Orotate phosphoribosyltransferase. | 0.677 |
mprA_1 | mtrB | RN50_00225 | RN50_03205 | Response regulator MprA. | Sensor histidine kinase MtrB. | 0.756 |
mprA_3 | mtrB | RN50_00755 | RN50_03205 | Response regulator MprA. | Sensor histidine kinase MtrB. | 0.769 |
mtrA | KJL18100.1 | RN50_03206 | RN50_03207 | DNA-binding response regulator MtrA. | Hypothetical protein. | 0.546 |
mtrA | lpqB | RN50_03206 | RN50_03204 | DNA-binding response regulator MtrA. | Lipoprotein LpqB precursor. | 0.809 |
mtrA | mtrB | RN50_03206 | RN50_03205 | DNA-binding response regulator MtrA. | Sensor histidine kinase MtrB. | 0.995 |
mtrA | pyrE_2 | RN50_03206 | RN50_03203 | DNA-binding response regulator MtrA. | Orotate phosphoribosyltransferase. | 0.541 |
mtrB | KJL18100.1 | RN50_03205 | RN50_03207 | Sensor histidine kinase MtrB. | Hypothetical protein. | 0.679 |
mtrB | kdpE | RN50_03205 | RN50_02065 | Sensor histidine kinase MtrB. | KDP operon transcriptional regulatory protein KdpE. | 0.717 |
mtrB | lpqB | RN50_03205 | RN50_03204 | Sensor histidine kinase MtrB. | Lipoprotein LpqB precursor. | 0.981 |
mtrB | mprA_1 | RN50_03205 | RN50_00225 | Sensor histidine kinase MtrB. | Response regulator MprA. | 0.756 |
mtrB | mprA_3 | RN50_03205 | RN50_00755 | Sensor histidine kinase MtrB. | Response regulator MprA. | 0.769 |
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