Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL17747.1 | accA1 | RN50_02846 | RN50_02845 | Methylmalonyl-CoA carboxyltransferase 12S subunit. | Acetyl-/propionyl-coenzyme A carboxylase alpha chain. | 0.992 |
KJL17747.1 | accC_1 | RN50_02846 | RN50_01108 | Methylmalonyl-CoA carboxyltransferase 12S subunit. | Biotin carboxylase. | 0.964 |
KJL17747.1 | accC_2 | RN50_02846 | RN50_01308 | Methylmalonyl-CoA carboxyltransferase 12S subunit. | Biotin carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.694 |
KJL17747.1 | birA | RN50_02846 | RN50_03252 | Methylmalonyl-CoA carboxyltransferase 12S subunit. | Bifunctional ligase/repressor BirA. | 0.771 |
KJL17747.1 | fabF | RN50_02846 | RN50_02182 | Methylmalonyl-CoA carboxyltransferase 12S subunit. | 3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.433 |
KJL18144.1 | KJL18146.1 | RN50_03251 | RN50_03253 | Bacterial membrane flanked domain protein. | Hypothetical protein. | 0.536 |
KJL18144.1 | birA | RN50_03251 | RN50_03252 | Bacterial membrane flanked domain protein. | Bifunctional ligase/repressor BirA. | 0.702 |
KJL18146.1 | KJL18144.1 | RN50_03253 | RN50_03251 | Hypothetical protein. | Bacterial membrane flanked domain protein. | 0.536 |
KJL18146.1 | birA | RN50_03253 | RN50_03252 | Hypothetical protein. | Bifunctional ligase/repressor BirA. | 0.773 |
TsaB | birA | RN50_00986 | RN50_03252 | Glycoprotease family protein. | Bifunctional ligase/repressor BirA. | 0.604 |
TsaB | tadA | RN50_00986 | RN50_02397 | Glycoprotease family protein. | tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.499 |
accA1 | KJL17747.1 | RN50_02845 | RN50_02846 | Acetyl-/propionyl-coenzyme A carboxylase alpha chain. | Methylmalonyl-CoA carboxyltransferase 12S subunit. | 0.992 |
accA1 | accC_1 | RN50_02845 | RN50_01108 | Acetyl-/propionyl-coenzyme A carboxylase alpha chain. | Biotin carboxylase. | 0.912 |
accA1 | accC_2 | RN50_02845 | RN50_01308 | Acetyl-/propionyl-coenzyme A carboxylase alpha chain. | Biotin carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.666 |
accA1 | accD5 | RN50_02845 | RN50_01100 | Acetyl-/propionyl-coenzyme A carboxylase alpha chain. | Putative propionyl-CoA carboxylase beta chain 5. | 0.996 |
accA1 | birA | RN50_02845 | RN50_03252 | Acetyl-/propionyl-coenzyme A carboxylase alpha chain. | Bifunctional ligase/repressor BirA. | 0.915 |
accA1 | fabF | RN50_02845 | RN50_02182 | Acetyl-/propionyl-coenzyme A carboxylase alpha chain. | 3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.889 |
accC_1 | KJL17747.1 | RN50_01108 | RN50_02846 | Biotin carboxylase. | Methylmalonyl-CoA carboxyltransferase 12S subunit. | 0.964 |
accC_1 | accA1 | RN50_01108 | RN50_02845 | Biotin carboxylase. | Acetyl-/propionyl-coenzyme A carboxylase alpha chain. | 0.912 |
accC_1 | accC_2 | RN50_01108 | RN50_01308 | Biotin carboxylase. | Biotin carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.664 |
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