STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ19505.1Protein of unknown function. (72 aa)    
Predicted Functional Partners:
SEJ19531.1
Protein of unknown function.
       0.732
SEJ19592.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily.
 
     0.685
SEJ19557.1
Superfamily I DNA or RNA helicase.
       0.683
rbpA-2
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.574
SEJ19471.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
       0.457
SEJ62121.1
Hypothetical protein.
  
     0.454
SEI88881.1
Protein of unknown function.
  
     0.449
SEJ64498.1
DNA polymerase-3 subunit delta'.
  
     0.447
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.442
SEJ38156.1
Protein of unknown function.
  
     0.429
Your Current Organism:
Lysinimicrobium mangrovi
NCBI taxonomy Id: 1043493
Other names: DSM 24868, Demequinaceae bacterium HI08-69, L. mangrovi, Lysinimicrobium mangrovi Hamada et al. 2012, NBRC 105856, strain HI08-69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.