STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EH31_02945Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)    
Predicted Functional Partners:
EH31_13945
Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 0.978
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.965
EH31_15475
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.960
EH31_11525
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.954
EH31_07640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.952
narH
Nitrate reductase; With NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.951
EH31_07635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.946
EH31_08545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.937
EH31_08600
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.937
EH31_16215
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.937
Your Current Organism:
Erythrobacter longus
NCBI taxonomy Id: 1044
Other names: ATCC 33941, CIP 104268, DSM 6997, E. longus, IFO 14126, JCM 6170, NBRC 14126, strain OCh101
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