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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EH31_03335MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)    
Predicted Functional Partners:
EH31_03340
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.835
EH31_03345
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.641
EH31_01285
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.524
EH31_03350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.523
EH31_00700
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.500
EH31_09745
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.452
EH31_15700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
EH31_03355
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.
       0.433
EH31_03360
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
EH31_15305
Aminobenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.430
Your Current Organism:
Erythrobacter longus
NCBI taxonomy Id: 1044
Other names: ATCC 33941, CIP 104268, DSM 6997, E. longus, IFO 14126, JCM 6170, NBRC 14126, strain OCh101
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