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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EH31_09220Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)    
Predicted Functional Partners:
EH31_09225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.930
ybeY
rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.805
EH31_09210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
EH31_09215
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
EH31_11445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.647
EH31_10275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.642
EH31_12220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.599
gpsA
Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.550
uppP
UDP pyrophosphate phosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.547
EH31_15865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.546
Your Current Organism:
Erythrobacter longus
NCBI taxonomy Id: 1044
Other names: ATCC 33941, CIP 104268, DSM 6997, E. longus, IFO 14126, JCM 6170, NBRC 14126, strain OCh101
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