STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EH31_13735Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (918 aa)    
Predicted Functional Partners:
EH31_13755
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.952
EH31_13760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.931
EH31_13740
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.798
EH31_12010
Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.530
EH31_13745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
EH31_13750
Translation repressor RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
EH31_13765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.432
Your Current Organism:
Erythrobacter longus
NCBI taxonomy Id: 1044
Other names: ATCC 33941, CIP 104268, DSM 6997, E. longus, IFO 14126, JCM 6170, NBRC 14126, strain OCh101
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