STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAG_07488Histone deacetylase 6. (1165 aa)    
Predicted Functional Partners:
EAG_09451
Tudor domain-containing protein PHF20L1.
    
 0.991
EAG_07316
Paired amphipathic helix protein Sin3a.
    
 0.924
EAG_04647
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
  
 
 
0.854
EAG_00857
Methyl-CpG-binding domain protein 3.
    
 0.783
EAG_08577
Sin3 histone deacetylase corepressor complex component SDS3.
    
 0.771
EAG_08047
REST corepressor.
    
 0.762
EAG_06327
Histone deacetylase complex subunit SAP30-like protein.
    
 0.761
EAG_15706
Metastasis-associated protein MTA1.
    
 0.736
EAG_09858
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
  
 
 
0.691
EAG_08233
CREB-binding protein.
    
 0.687
Your Current Organism:
Camponotus floridanus
NCBI taxonomy Id: 104421
Other names: C. floridanus, Camponotus floridana, Florida carpenter ant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.