STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAG_13948RBR-type E3 ubiquitin transferase. (509 aa)    
Predicted Functional Partners:
EAG_11228
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.965
EAG_04837
RING-box protein 1A.
    
 0.921
EAG_06521
Ubiquitin.
    
  0.911
EAG_14984
Ubiquitin.
    
 0.905
EAG_10573
Cullin-1; Belongs to the cullin family.
   
 0.900
EAG_11229
Cullin-3; Belongs to the cullin family.
   
 0.837
EAG_14868
Mitoferrin-2; Belongs to the mitochondrial carrier (TC 2.A.29) family.
 
      0.819
e(y)2
Enhancer of yellow 2 transcription factor; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.789
EAG_09518
Translation initiation factor eIF-2B subunit epsilon.
 
      0.782
EAG_12950
Ubiquitin.
    
 0.729
Your Current Organism:
Camponotus floridanus
NCBI taxonomy Id: 104421
Other names: C. floridanus, Camponotus floridana, Florida carpenter ant
Server load: low (14%) [HD]