STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAG_09362tRNA (Cytosine-5-)-methyltransferase CG6133; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (665 aa)    
Predicted Functional Partners:
EAG_15544
Nucleolar complex protein 2-like protein.
   
 
 0.939
EAG_01250
Pumilio domain-containing protein KIAA0020-like protein.
   
   0.908
EAG_03239
Brix domain-containing protein 2-like protein.
   
 
 0.881
EAG_08229
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.875
EAG_02736
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.868
EAG_04350
Nucleolar protein 5.
   
 
 0.853
EAG_16330
CCAAT/enhancer-binding protein zeta.
   
 
 0.833
EAG_07236
Guanine nucleotide-binding protein-like 3-like protein.
   
 
 0.823
EAG_04538
Putative RNA methyltransferase NOL1; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
0.822
EAG_01643
Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
0.818
Your Current Organism:
Camponotus floridanus
NCBI taxonomy Id: 104421
Other names: C. floridanus, Camponotus floridana, Florida carpenter ant
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