STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBRU01_23360Eukaryotic peptide chain release factor GTP-binding subunit. (670 aa)    
Predicted Functional Partners:
OBRU01_14550
Exosomal 3'-5' exoribonuclease complex subunit ski4.
    
 0.997
OBRU01_12144
Exosc7 protein.
    
 0.997
OBRU01_19589
Exosome complex exonuclease RRP4.
    
 0.996
OBRU01_10175
Exosome complex exonuclease RRP45.
   
 0.996
OBRU01_02355
Putative exosome complex exonuclease RRP41.
    
 0.996
OBRU01_16961
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
   
 
 0.992
OBRU01_24078
mRNA transport regulator 3.
    
 0.989
OBRU01_24029
Uncharacterized protein.
    
 0.988
OBRU01_19536
Uncharacterized protein.
    
 0.988
OBRU01_01983
Exosome complex exonuclease rrp43 (Ribosomal RNA processing protein 43).
    
 0.988
Your Current Organism:
Operophtera brumata
NCBI taxonomy Id: 104452
Other names: O. brumata, winter moth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.