STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBRU01_20846Zinc finger CCCH domain-containing protein 11A. (486 aa)    
Predicted Functional Partners:
OBRU01_14181
Nuclear protein Hcc-1.
    
 0.923
OBRU01_04262
RRM domain-containing protein.
     
 0.865
OBRU01_02078
THO complex subunit 2.
   
 0.856
OBRU01_05676
Helicase at 25E.
    
 0.850
OBRU01_19533
THO complex subunit 1.
    
 0.848
OBRU01_22587
SC element binding protein.
   
  
 0.845
OBRU01_12134
Zinc finger CCCH domain-containing protein 13.
   
 0.841
OBRU01_13803
Putative Ngg1 interacting factor 3 like 1 binding protein 1.
    
 0.825
OBRU01_09088
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]
    
 0.764
OBRU01_03691
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
    
  0.754
Your Current Organism:
Operophtera brumata
NCBI taxonomy Id: 104452
Other names: O. brumata, winter moth
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