OBRU01_16354 protein (Operophtera brumata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OBRU01_16354

Enoyl-CoA delta isomerase 1. (282 aa)

Predicted Functional Partners:

OBRU01_26277

0.970

OBRU01_18921

0.970

OBRU01_10532

0.960

OBRU01_12660

0.955

OBRU01_26047

0.949

OBRU01_20452

0.949

OBRU01_00156

0.935

OBRU01_12239

0.934

OBRU01_00412

0.931

OBRU01_14251

0.927

Your Current Organism:

Operophtera brumata

NCBI taxonomy Id: 104452
Other names: O. brumata, winter moth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OBRU01_00156	OBRU01_00412	A0A0L7LVE2	A0A0L7LRB9	Uncharacterized protein.	Crotonobetainyl-CoA-hydratase.	0.989
OBRU01_00156	OBRU01_10532	A0A0L7LVE2	A0A0L7L7F2	Uncharacterized protein.	Uncharacterized protein.	0.857
OBRU01_00156	OBRU01_12239	A0A0L7LVE2	A0A0L7LAE7	Uncharacterized protein.	Acyl-CoA dehydrogenase.	0.842
OBRU01_00156	OBRU01_12660	A0A0L7LVE2	A0A0L7L7Z8	Uncharacterized protein.	Sterol carrier protein 2/3-oxoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.932
OBRU01_00156	OBRU01_14251	A0A0L7LVE2	A0A0L7L6X0	Uncharacterized protein.	Acyl-coa dehydrogenase.	0.824
OBRU01_00156	OBRU01_16354	A0A0L7LVE2	A0A0L7L2Q3	Uncharacterized protein.	Enoyl-CoA delta isomerase 1.	0.935
OBRU01_00156	OBRU01_18921	A0A0L7LVE2	A0A0L7KXV4	Uncharacterized protein.	Trifunctional enzyme beta subunit (Tp-beta); Belongs to the thiolase-like superfamily. Thiolase family.	0.722
OBRU01_00156	OBRU01_20452	A0A0L7LVE2	A0A0L7KS71	Uncharacterized protein.	Hydroxysteroid dehydrogenase.	0.926
OBRU01_00156	OBRU01_26047	A0A0L7LVE2	A0A0L7K3X0	Uncharacterized protein.	Putative acetyl-CoA acetyltransferase, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	0.939
OBRU01_00156	OBRU01_26277	A0A0L7LVE2	A0A0L7K3J9	Uncharacterized protein.	Fatty acid beta-oxidation complex subunit beta.	0.722
OBRU01_00412	OBRU01_00156	A0A0L7LRB9	A0A0L7LVE2	Crotonobetainyl-CoA-hydratase.	Uncharacterized protein.	0.989
OBRU01_00412	OBRU01_10532	A0A0L7LRB9	A0A0L7L7F2	Crotonobetainyl-CoA-hydratase.	Uncharacterized protein.	0.961
OBRU01_00412	OBRU01_12239	A0A0L7LRB9	A0A0L7LAE7	Crotonobetainyl-CoA-hydratase.	Acyl-CoA dehydrogenase.	0.987
OBRU01_00412	OBRU01_12660	A0A0L7LRB9	A0A0L7L7Z8	Crotonobetainyl-CoA-hydratase.	Sterol carrier protein 2/3-oxoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.998
OBRU01_00412	OBRU01_14251	A0A0L7LRB9	A0A0L7L6X0	Crotonobetainyl-CoA-hydratase.	Acyl-coa dehydrogenase.	0.985
OBRU01_00412	OBRU01_16354	A0A0L7LRB9	A0A0L7L2Q3	Crotonobetainyl-CoA-hydratase.	Enoyl-CoA delta isomerase 1.	0.931
OBRU01_00412	OBRU01_18921	A0A0L7LRB9	A0A0L7KXV4	Crotonobetainyl-CoA-hydratase.	Trifunctional enzyme beta subunit (Tp-beta); Belongs to the thiolase-like superfamily. Thiolase family.	0.994
OBRU01_00412	OBRU01_20452	A0A0L7LRB9	A0A0L7KS71	Crotonobetainyl-CoA-hydratase.	Hydroxysteroid dehydrogenase.	0.974
OBRU01_00412	OBRU01_26047	A0A0L7LRB9	A0A0L7K3X0	Crotonobetainyl-CoA-hydratase.	Putative acetyl-CoA acetyltransferase, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	0.993
OBRU01_00412	OBRU01_26277	A0A0L7LRB9	A0A0L7K3J9	Crotonobetainyl-CoA-hydratase.	Fatty acid beta-oxidation complex subunit beta.	0.994