STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBRU01_16335Reverse transcriptase. (210 aa)    
Predicted Functional Partners:
OBRU01_19466
Ribosomal protein S30.
    
  0.816
OBRU01_09110
Putative BRCA1-associated RING domain protein.
    
 0.796
OBRU01_25735
Putative coiled-coil domain containing 98.
    
 0.690
OBRU01_08465
BRISC and BRCA1-A complex member 1.
    
 0.690
OBRU01_20557
Mre11; Belongs to the MRE11/RAD32 family.
    
  0.637
OBRU01_19551
Ribosomal protein L21.
   
   0.609
OBRU01_21659
MPN domain-containing protein.
    
  0.584
OBRU01_17688
Putative myb-like, SWIRM and MPN domains 1.
    
 0.584
OBRU01_16943
26S proteasome non-ATPase regulatory subunit 14.
    
  0.584
OBRU01_10260
Lys-63-specific deubiquitinase BRCC36.
    
  0.584
Your Current Organism:
Operophtera brumata
NCBI taxonomy Id: 104452
Other names: O. brumata, winter moth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.