OBRU01_12069 protein (Operophtera brumata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OBRU01_12069

RCC2-like protein. (64 aa)

Predicted Functional Partners:

OBRU01_05490

0.873

OBRU01_19587

0.778

OBRU01_21775

0.778

OBRU01_15214

0.728

OBRU01_15043

0.717

OBRU01_15042

0.717

OBRU01_09110

0.708

OBRU01_04255

0.705

OBRU01_02248

0.703

OBRU01_08728

0.688

Your Current Organism:

Operophtera brumata

NCBI taxonomy Id: 104452
Other names: O. brumata, winter moth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OBRU01_02248	OBRU01_04255	A0A0L7LTK6	A0A0L7LMZ9	Putative ring finger protein 8-like protein.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.592
OBRU01_02248	OBRU01_09110	A0A0L7LTK6	A0A0L7LH26	Putative ring finger protein 8-like protein.	Putative BRCA1-associated RING domain protein.	0.908
OBRU01_02248	OBRU01_12069	A0A0L7LTK6	A0A0L7LBC4	Putative ring finger protein 8-like protein.	RCC2-like protein.	0.703
OBRU01_02248	OBRU01_15042	A0A0L7LTK6	A0A0L7L2A3	Putative ring finger protein 8-like protein.	AN1-type zinc finger and ubiquitin domain-containing protein 1.	0.898
OBRU01_02248	OBRU01_15043	A0A0L7LTK6	A0A0L7L1T0	Putative ring finger protein 8-like protein.	AN1-type domain-containing protein.	0.898
OBRU01_04255	OBRU01_02248	A0A0L7LMZ9	A0A0L7LTK6	Leucine-rich repeat serine/threonine-protein kinase 1.	Putative ring finger protein 8-like protein.	0.592
OBRU01_04255	OBRU01_05490	A0A0L7LMZ9	A0A0L7LMS4	Leucine-rich repeat serine/threonine-protein kinase 1.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.558
OBRU01_04255	OBRU01_08728	A0A0L7LMZ9	A0A0L7LGX2	Leucine-rich repeat serine/threonine-protein kinase 1.	Putative recombining binding protein suppressor of hairless.	0.400
OBRU01_04255	OBRU01_09110	A0A0L7LMZ9	A0A0L7LH26	Leucine-rich repeat serine/threonine-protein kinase 1.	Putative BRCA1-associated RING domain protein.	0.986
OBRU01_04255	OBRU01_12069	A0A0L7LMZ9	A0A0L7LBC4	Leucine-rich repeat serine/threonine-protein kinase 1.	RCC2-like protein.	0.705
OBRU01_04255	OBRU01_15042	A0A0L7LMZ9	A0A0L7L2A3	Leucine-rich repeat serine/threonine-protein kinase 1.	AN1-type zinc finger and ubiquitin domain-containing protein 1.	0.992
OBRU01_04255	OBRU01_15043	A0A0L7LMZ9	A0A0L7L1T0	Leucine-rich repeat serine/threonine-protein kinase 1.	AN1-type domain-containing protein.	0.992
OBRU01_04255	OBRU01_15214	A0A0L7LMZ9	A0A0L7L596	Leucine-rich repeat serine/threonine-protein kinase 1.	Putative serine/threonine-protein kinase nek2.	0.608
OBRU01_04255	OBRU01_19587	A0A0L7LMZ9	A0A0L7KLU9	Leucine-rich repeat serine/threonine-protein kinase 1.	RAN binding protein.	0.988
OBRU01_04255	OBRU01_21775	A0A0L7LMZ9	A0A0L7KSQ6	Leucine-rich repeat serine/threonine-protein kinase 1.	Peptidyl-prolyl cis-trans isomerase E.	0.988
OBRU01_05490	OBRU01_04255	A0A0L7LMS4	A0A0L7LMZ9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.558
OBRU01_05490	OBRU01_12069	A0A0L7LMS4	A0A0L7LBC4	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	RCC2-like protein.	0.873
OBRU01_05490	OBRU01_15042	A0A0L7LMS4	A0A0L7L2A3	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	AN1-type zinc finger and ubiquitin domain-containing protein 1.	0.475
OBRU01_05490	OBRU01_15043	A0A0L7LMS4	A0A0L7L1T0	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	AN1-type domain-containing protein.	0.475
OBRU01_05490	OBRU01_19587	A0A0L7LMS4	A0A0L7KLU9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	RAN binding protein.	0.999