OBRU01_07437 protein (Operophtera brumata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OBRU01_07437

Uncharacterized protein. (253 aa)

Predicted Functional Partners:

OBRU01_05389

0.587

OBRU01_07439

0.459

OBRU01_15920

0.448

OBRU01_19446

0.438

OBRU01_09262

0.438

OBRU01_09991

0.434

Your Current Organism:

Operophtera brumata

NCBI taxonomy Id: 104452
Other names: O. brumata, winter moth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OBRU01_05389	OBRU01_07437	A0A0L7LLE3	A0A0L7LIU5	Uncharacterized protein.	Uncharacterized protein.	0.587
OBRU01_05389	OBRU01_09991	A0A0L7LLE3	A0A0L7LDE9	Uncharacterized protein.	Putative WD repeat-containing protein 59.	0.913
OBRU01_07437	OBRU01_05389	A0A0L7LIU5	A0A0L7LLE3	Uncharacterized protein.	Uncharacterized protein.	0.587
OBRU01_07437	OBRU01_07439	A0A0L7LIU5	A0A0L7LJD8	Uncharacterized protein.	Enoyl-CoA hydratase domain-containing protein 3.	0.459
OBRU01_07437	OBRU01_09262	A0A0L7LIU5	A0A0L7L9P1	Uncharacterized protein.	Protein RRNAD1.	0.438
OBRU01_07437	OBRU01_09991	A0A0L7LIU5	A0A0L7LDE9	Uncharacterized protein.	Putative WD repeat-containing protein 59.	0.434
OBRU01_07437	OBRU01_15920	A0A0L7LIU5	A0A0L7L3G1	Uncharacterized protein.	Putative DNA ligase IV.	0.448
OBRU01_07437	OBRU01_19446	A0A0L7LIU5	A0A0L7KX42	Uncharacterized protein.	Putative poly (ADP-ribose) polymerase family, member 16.	0.438
OBRU01_07439	OBRU01_07437	A0A0L7LJD8	A0A0L7LIU5	Enoyl-CoA hydratase domain-containing protein 3.	Uncharacterized protein.	0.459
OBRU01_09262	OBRU01_07437	A0A0L7L9P1	A0A0L7LIU5	Protein RRNAD1.	Uncharacterized protein.	0.438
OBRU01_09262	OBRU01_09991	A0A0L7L9P1	A0A0L7LDE9	Protein RRNAD1.	Putative WD repeat-containing protein 59.	0.865
OBRU01_09991	OBRU01_05389	A0A0L7LDE9	A0A0L7LLE3	Putative WD repeat-containing protein 59.	Uncharacterized protein.	0.913
OBRU01_09991	OBRU01_07437	A0A0L7LDE9	A0A0L7LIU5	Putative WD repeat-containing protein 59.	Uncharacterized protein.	0.434
OBRU01_09991	OBRU01_09262	A0A0L7LDE9	A0A0L7L9P1	Putative WD repeat-containing protein 59.	Protein RRNAD1.	0.865
OBRU01_09991	OBRU01_19446	A0A0L7LDE9	A0A0L7KX42	Putative WD repeat-containing protein 59.	Putative poly (ADP-ribose) polymerase family, member 16.	0.865
OBRU01_15920	OBRU01_07437	A0A0L7L3G1	A0A0L7LIU5	Putative DNA ligase IV.	Uncharacterized protein.	0.448
OBRU01_19446	OBRU01_07437	A0A0L7KX42	A0A0L7LIU5	Putative poly (ADP-ribose) polymerase family, member 16.	Uncharacterized protein.	0.438
OBRU01_19446	OBRU01_09991	A0A0L7KX42	A0A0L7LDE9	Putative poly (ADP-ribose) polymerase family, member 16.	Putative WD repeat-containing protein 59.	0.865