STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI71814.1Sugar phosphate isomerase/epimerase. (363 aa)    
Predicted Functional Partners:
SDI71652.1
ABC-type transport system, substrate-binding protein.
       0.773
SDI71689.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
SDI71720.1
Peptide/nickel transport system ATP-binding protein/oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
SDI71752.1
Peptide/nickel transport system permease protein.
       0.773
SDI71781.1
Peptide/nickel transport system permease protein.
       0.773
SDI76290.1
PTS system, fructose-specific IIC component.
  
 
  0.759
SDI71620.1
Sugar phosphate isomerase/epimerase.
 
    
0.671
SDI54311.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Belongs to the TPP enzyme family.
  
 
 0.565
SDI71847.1
DNA-binding transcriptional regulator, FadR family.
       0.546
SDI71883.1
Cytosine/adenosine deaminase.
       0.546
Your Current Organism:
Arthrobacter cupressi
NCBI taxonomy Id: 1045773
Other names: A. cupressi, Arthrobacter cupressi Zhang et al. 2012, Arthrobacter sp. D48, CGMCC 1.10783, DSM 24664, strain D48
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