STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE03735.1PAS domain S-box-containing protein. (489 aa)    
Predicted Functional Partners:
SFF34584.1
Two-component system, response regulator, stage 0 sporulation protein F.
  
 
 0.956
SFF02686.1
Two-component system, response regulator, stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
  
 0.849
SFE83199.1
PAS domain S-box-containing protein.
  
  
 
0.817
SFD84061.1
Signal transduction histidine kinase.
  
  
 
0.789
SFD84084.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  
  0.757
SFD64383.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
 
  0.735
SFF20062.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 
  0.735
SFE83178.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
  0.734
SFF17976.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
 
  0.719
SFE18091.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
  0.711
Your Current Organism:
Paenibacillus catalpae
NCBI taxonomy Id: 1045775
Other names: CGMCC 1.10784, DSM 24714, P. catalpae, Paenibacillus catalpae Zhang et al. 2013, Paenibacillus sp. D75, strain D75
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