ESN61872.1 protein (Serratia sp. ATCC 39006)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ESN61872.1

KEGG: binding-protein-dependent transporters inner membrane component. (284 aa)

Predicted Functional Partners:

ESN61871.1

0.976

ESN61873.1

0.969

ESN62003.1

0.911

ESN64883.1

0.890

potG

0.888

ESN64880.1

0.885

ESN63737.1

0.874

potA

0.869

ESN63739.1

0.854

ESN61870.1

0.830

Your Current Organism:

Serratia sp. ATCC 39006

NCBI taxonomy Id: 104623
Other names: S. sp. ATCC 39006

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ESN61870.1	ESN61871.1	Ser39006_02794	Ser39006_02795	Hypothetical protein; KEGG: family 1 extracellular solute-binding protein.	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	0.858
ESN61870.1	ESN61872.1	Ser39006_02794	Ser39006_02796	Hypothetical protein; KEGG: family 1 extracellular solute-binding protein.	KEGG: binding-protein-dependent transporters inner membrane component.	0.830
ESN61870.1	ESN61873.1	Ser39006_02794	Ser39006_02797	Hypothetical protein; KEGG: family 1 extracellular solute-binding protein.	Polyamine-transporting ATPase; KEGG: ABC transporter of substrate X, ATP-binding subunit; Belongs to the ABC transporter superfamily.	0.765
ESN61870.1	ESN62003.1	Ser39006_02794	Ser39006_02927	Hypothetical protein; KEGG: family 1 extracellular solute-binding protein.	KEGG: binding-protein-dependent transport systems inner membrane component.	0.628
ESN61871.1	ESN61870.1	Ser39006_02795	Ser39006_02794	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	Hypothetical protein; KEGG: family 1 extracellular solute-binding protein.	0.858
ESN61871.1	ESN61872.1	Ser39006_02795	Ser39006_02796	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	KEGG: binding-protein-dependent transporters inner membrane component.	0.976
ESN61871.1	ESN61873.1	Ser39006_02795	Ser39006_02797	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	Polyamine-transporting ATPase; KEGG: ABC transporter of substrate X, ATP-binding subunit; Belongs to the ABC transporter superfamily.	0.958
ESN61871.1	ESN62003.1	Ser39006_02795	Ser39006_02927	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	KEGG: binding-protein-dependent transport systems inner membrane component.	0.489
ESN61871.1	ESN63737.1	Ser39006_02795	Ser39006_01145	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	KEGG: ydcT, spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.	0.805
ESN61871.1	ESN64880.1	Ser39006_02795	Ser39006_02288	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	Hypothetical protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.844
ESN61871.1	ESN64883.1	Ser39006_02795	Ser39006_02291	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	Hypothetical protein; KEGG: putrescine ABC transporter membrane protein.	0.663
ESN61871.1	potA	Ser39006_02795	Ser39006_02933	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	Polyamine-transporting ATPase; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.763
ESN61871.1	potG	Ser39006_02795	Ser39006_02289	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	Polyamine-transporting ATPase; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.810
ESN61872.1	ESN61870.1	Ser39006_02796	Ser39006_02794	KEGG: binding-protein-dependent transporters inner membrane component.	Hypothetical protein; KEGG: family 1 extracellular solute-binding protein.	0.830
ESN61872.1	ESN61871.1	Ser39006_02796	Ser39006_02795	KEGG: binding-protein-dependent transporters inner membrane component.	Hypothetical protein; KEGG: ABC transporter of substrate X, permease subunit II.	0.976
ESN61872.1	ESN61873.1	Ser39006_02796	Ser39006_02797	KEGG: binding-protein-dependent transporters inner membrane component.	Polyamine-transporting ATPase; KEGG: ABC transporter of substrate X, ATP-binding subunit; Belongs to the ABC transporter superfamily.	0.969
ESN61872.1	ESN62003.1	Ser39006_02796	Ser39006_02927	KEGG: binding-protein-dependent transporters inner membrane component.	KEGG: binding-protein-dependent transport systems inner membrane component.	0.911
ESN61872.1	ESN63737.1	Ser39006_02796	Ser39006_01145	KEGG: binding-protein-dependent transporters inner membrane component.	KEGG: ydcT, spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.	0.874
ESN61872.1	ESN63739.1	Ser39006_02796	Ser39006_01147	KEGG: binding-protein-dependent transporters inner membrane component.	KEGG: binding-protein-dependent transport systems inner membrane component.	0.854
ESN61872.1	ESN64880.1	Ser39006_02796	Ser39006_02288	KEGG: binding-protein-dependent transporters inner membrane component.	Hypothetical protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.885