Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF16851.1 | SDF16884.1 | SAMN04488121_1011001 | SAMN04488121_1011002 | Hypothetical protein. | Protein SCO1/2. | 0.556 |
SDF16851.1 | SDF16913.1 | SAMN04488121_1011001 | SAMN04488121_1011003 | Hypothetical protein. | Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family. | 0.523 |
SDF16851.1 | purN | SAMN04488121_1011001 | SAMN04488121_1011000 | Hypothetical protein. | Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.545 |
SDF16884.1 | SDF16851.1 | SAMN04488121_1011002 | SAMN04488121_1011001 | Protein SCO1/2. | Hypothetical protein. | 0.556 |
SDF16884.1 | SDF16913.1 | SAMN04488121_1011002 | SAMN04488121_1011003 | Protein SCO1/2. | Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family. | 0.765 |
SDF16884.1 | purN | SAMN04488121_1011002 | SAMN04488121_1011000 | Protein SCO1/2. | Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.405 |
SDF16913.1 | SDF16851.1 | SAMN04488121_1011003 | SAMN04488121_1011001 | Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family. | Hypothetical protein. | 0.523 |
SDF16913.1 | SDF16884.1 | SAMN04488121_1011003 | SAMN04488121_1011002 | Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family. | Protein SCO1/2. | 0.765 |
purN | SDF16851.1 | SAMN04488121_1011000 | SAMN04488121_1011001 | Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | Hypothetical protein. | 0.545 |
purN | SDF16884.1 | SAMN04488121_1011000 | SAMN04488121_1011002 | Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | Protein SCO1/2. | 0.405 |