STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF19441.18-oxo-dGTP diphosphatase. (230 aa)    
Predicted Functional Partners:
SDF19544.1
Bifunctional NMN adenylyltransferase/nudix hydrolase.
 
 
 0.705
SDH48246.1
HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes.
    
 0.641
SDG08203.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
  0.636
SDF19405.1
Hypothetical protein.
       0.628
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.623
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.608
SDF69433.1
Signal transduction histidine kinase.
  
 
  0.601
SDH43495.1
PAS domain S-box-containing protein.
  
 
  0.601
SDG43407.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.563
SDF19372.1
PDZ domain-containing protein.
       0.531
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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