STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF21107.1Periplasmic chaperone for outer membrane proteins SurA. (461 aa)    
Predicted Functional Partners:
SDF13610.1
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B).
   
 0.872
SDG46501.1
Beta-barrel assembly machine subunit BamA.
  
 
 0.787
SDH15449.1
OstA-like protein.
 
   
 0.776
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
 
  
 0.690
SDG00947.1
Hypothetical protein.
  
     0.686
SDH15574.1
Hypothetical protein.
 
  
 0.680
SDF62345.1
Protein of unknown function.
  
     0.659
SDF23826.1
Peptidyl-prolyl cis-trans isomerase D.
  
     0.651
SDF14633.1
UDP-2,3-diacylglucosamine hydrolase.
  
     0.650
SDG39032.1
Lipopolysaccharide export system permease protein.
 
     0.647
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.