STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF21347.1Hypothetical protein. (321 aa)    
Predicted Functional Partners:
SDH05108.1
Uncharacterized membrane protein.
  
    0.701
SDF21381.1
Putative signal transducing protein.
       0.695
SDE86997.1
Hypothetical protein.
 
     0.689
SDG55599.1
Helix-hairpin-helix motif-containing protein.
 
     0.613
SDF17002.1
Lamin Tail Domain.
  
     0.594
SDF21319.1
Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.593
SDF21417.1
Phosphatidate cytidylyltransferase.
       0.559
SDG76680.1
Hypothetical protein.
  
     0.550
SDG42541.1
Hypothetical protein.
  
     0.547
SDH15449.1
OstA-like protein.
  
     0.524
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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