STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF21834.1Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. (195 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase.
 
  
 0.781
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.758
SDF28471.1
Exodeoxyribonuclease-3.
  
    0.695
SDG87496.1
Exodeoxyribonuclease-3.
  
    0.695
SDE98245.1
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
  
 0.656
SDF21871.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
       0.555
SDF21805.1
TIGR00255 family protein.
  
    0.538
SDF21772.1
Gliding motility-associated lipoprotein GldH.
       0.425
SDF21742.1
His Kinase A (phospho-acceptor) domain-containing protein.
       0.422
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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