STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE87285.1Tetratricopeptide repeat-containing protein. (495 aa)    
Predicted Functional Partners:
hisS
histidyl-tRNA synthetase.
  
    0.842
SDF98739.1
Hypothetical protein.
  
     0.711
SDE88657.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.660
SDH07958.1
Hypothetical protein.
  
  
 0.649
SDE87261.1
DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
    0.591
SDG93483.1
Hypothetical protein.
  
     0.573
SDE87338.1
Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
       0.568
SDG50210.1
TPR repeat-containing protein.
  
     0.564
SDF49158.1
PA14 domain-containing protein.
  
     0.563
SDF13123.1
Hypothetical protein.
  
    0.561
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
Server load: low (22%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.