STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE90528.1Gnt-I system high-affinity gluconate transporter. (446 aa)    
Predicted Functional Partners:
SDE90496.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
     0.780
SDE90564.1
Putative ABC transport system permease protein.
       0.671
SDF26176.1
Gluconate kinase, FGGY family; Belongs to the FGGY kinase family.
 
  
 0.656
SDE90433.1
Membrane dipeptidase.
 
   
 0.630
SDE90468.1
D-serine deaminase, pyridoxal phosphate-dependent.
 
    0.618
SDE90601.1
Transcriptional regulator, LacI family.
     
 0.497
SDF68448.1
Sugar (pentulose or hexulose) kinase.
  
  
 0.424
SDF97526.1
Xylulokinase.
  
  
 0.424
SDE90635.1
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist.
  
    0.412
hisI
phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family.
      
 0.412
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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