STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF29267.1RNA polymerase sigma-70 factor, ECF subfamily. (161 aa)    
Predicted Functional Partners:
SDF29338.1
Outer membrane protein beta-barrel domain-containing protein.
 
    0.834
SDG60768.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.706
SDF01195.1
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.699
SDF83402.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.699
SDG77214.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.699
SDG41976.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.698
SDG04376.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.694
SDH14749.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.692
SDH60244.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.684
SDF59578.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.676
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.