STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE93308.1ATP-binding cassette, subfamily B. (591 aa)    
Predicted Functional Partners:
SDF55706.1
Acyl transferase domain-containing protein.
  
 0.908
SDF56003.1
Phosphopantetheine attachment site.
 
 0.813
SDH29242.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.768
SDE93328.1
Protein of unknown function.
       0.732
SDF80781.1
ATPase family associated with various cellular activities (AAA).
    
 0.615
SDG45715.1
ATPase family associated with various cellular activities (AAA).
    
 0.615
SDH06207.1
ATPase family associated with various cellular activities (AAA).
    
 0.615
SDF51468.1
Bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39.
 
 
 
0.605
SDG14407.1
ATP-binding cassette, subfamily B.
 
 
 
0.602
SDG55955.1
Acetoin utilization deacetylase AcuC.
   
 0.571
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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