STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE96123.1TROVE domain-containing protein. (508 aa)    
Predicted Functional Partners:
SDF18078.1
Phytanoyl-CoA dioxygenase (PhyH).
  
     0.697
SDF17953.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
 
     0.660
SDF18104.1
Predicted nucleotidyltransferase.
 
     0.572
SDH07210.1
Hypothetical protein.
 
     0.528
SDG02945.1
Hypothetical protein.
  
     0.491
SDH48208.1
Uncharacterized protein YigE, DUF2233 family.
  
     0.479
SDG88927.1
Phytanoyl-CoA dioxygenase (PhyH).
  
     0.444
SDG42130.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
 
     0.437
SDH07176.1
Hypothetical protein.
  
     0.434
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
    
 
 0.432
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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