STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE96316.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (308 aa)    
Predicted Functional Partners:
SDF18641.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.690
SDF05193.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.690
SDG88215.1
L-selenocysteine selenide-lyase (L-alanine-forming); Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.690
SDG65658.1
Alpha/beta hydrolase family protein.
     0.675
SDH55885.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
  
    0.611
SDH12773.1
Hypothetical protein.
 
     0.570
SDG65702.1
Porphobilinogen synthase; Belongs to the ALAD family.
 
      0.538
SDG46156.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
     0.505
SDF24157.1
Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
  
 
  0.496
SDG61096.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
     0.461
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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