STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF07808.1methylmalonyl-CoA epimerase. (132 aa)    
Predicted Functional Partners:
SDF08247.1
methylmalonyl-CoA mutase, C-terminal domain.
  
 0.996
SDG08850.1
propionyl-CoA carboxylase beta chain.
 
 
 0.974
SDH13437.1
methylmalonyl-CoA mutase, N-terminal domain.
 
  
 0.968
SDF16160.1
LAO/AO transport system kinase.
     0.904
SDG95604.1
Homogentisate 1,2-dioxygenase.
  
 0.903
SDH29242.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
    
 0.873
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
  
 0.855
SDH00912.1
Acetyl-CoA carboxylase, carboxyltransferase component.
 
 
 0.792
SDF55706.1
Acyl transferase domain-containing protein.
    
 0.775
SDF56003.1
Phosphopantetheine attachment site.
    
 0.700
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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