Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF09581.1 | SDF09614.1 | SAMN04488121_101773 | SAMN04488121_101774 | ATPase components of ABC transporters with duplicated ATPase domains. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.483 |
SDF09581.1 | SDF09642.1 | SAMN04488121_101773 | SAMN04488121_101775 | ATPase components of ABC transporters with duplicated ATPase domains. | Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19. | 0.483 |
SDF09581.1 | SDF09677.1 | SAMN04488121_101773 | SAMN04488121_101776 | ATPase components of ABC transporters with duplicated ATPase domains. | Hypothetical protein. | 0.483 |
SDF09581.1 | infB | SAMN04488121_101773 | SAMN04488121_1011136 | ATPase components of ABC transporters with duplicated ATPase domains. | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.433 |
SDF09614.1 | SDF09581.1 | SAMN04488121_101774 | SAMN04488121_101773 | RNA polymerase sigma-70 factor, ECF subfamily. | ATPase components of ABC transporters with duplicated ATPase domains. | 0.483 |
SDF09614.1 | SDF09642.1 | SAMN04488121_101774 | SAMN04488121_101775 | RNA polymerase sigma-70 factor, ECF subfamily. | Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19. | 0.935 |
SDF09614.1 | SDF09677.1 | SAMN04488121_101774 | SAMN04488121_101776 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.781 |
SDF09642.1 | SDF09581.1 | SAMN04488121_101775 | SAMN04488121_101773 | Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19. | ATPase components of ABC transporters with duplicated ATPase domains. | 0.483 |
SDF09642.1 | SDF09614.1 | SAMN04488121_101775 | SAMN04488121_101774 | Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.935 |
SDF09642.1 | SDF09677.1 | SAMN04488121_101775 | SAMN04488121_101776 | Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19. | Hypothetical protein. | 0.784 |
SDF09677.1 | SDF09581.1 | SAMN04488121_101776 | SAMN04488121_101773 | Hypothetical protein. | ATPase components of ABC transporters with duplicated ATPase domains. | 0.483 |
SDF09677.1 | SDF09614.1 | SAMN04488121_101776 | SAMN04488121_101774 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.781 |
SDF09677.1 | SDF09642.1 | SAMN04488121_101776 | SAMN04488121_101775 | Hypothetical protein. | Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19. | 0.784 |
SDF09677.1 | SDF18709.1 | SAMN04488121_101776 | SAMN04488121_1011065 | Hypothetical protein. | TonB protein C-terminal. | 0.419 |
SDF09677.1 | SDG22911.1 | SAMN04488121_101776 | SAMN04488121_103890 | Hypothetical protein. | TonB protein C-terminal. | 0.419 |
SDF09677.1 | SDG50459.1 | SAMN04488121_101776 | SAMN04488121_104494 | Hypothetical protein. | TonB family C-terminal domain-containing protein. | 0.419 |
SDF09677.1 | SDG65298.1 | SAMN04488121_101776 | SAMN04488121_105368 | Hypothetical protein. | TonB family C-terminal domain-containing protein. | 0.419 |
SDF09677.1 | SDG80676.1 | SAMN04488121_101776 | SAMN04488121_106353 | Hypothetical protein. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.419 |
SDF09677.1 | SDG81849.1 | SAMN04488121_101776 | SAMN04488121_106393 | Hypothetical protein. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.419 |
SDF09677.1 | infB | SAMN04488121_101776 | SAMN04488121_1011136 | Hypothetical protein. | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.419 |
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