STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF10598.1TonB-linked outer membrane protein, SusC/RagA family. (1043 aa)    
Predicted Functional Partners:
SDF10576.1
SusD family protein.
 
     0.931
SDF10518.1
Hypothetical protein.
 
     0.911
SDF10544.1
Hypothetical protein.
 
     0.911
SDF10629.1
Sulfane dehydrogenase subunit SoxC.
 
     0.837
SDG05352.1
SusD family protein.
  
     0.775
SDF10656.1
Cytochrome c.
 
     0.767
SDG38001.1
Hypothetical protein.
  
     0.767
SDG37974.1
Hypothetical protein.
  
     0.765
SDF14209.1
SusD family protein.
  
     0.733
SDG24676.1
Starch-binding associating with outer membrane.
 
     0.716
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.