STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF79988.1Putative lumazine-binding. (151 aa)    
Predicted Functional Partners:
SDF79920.1
4-oxalocrotonate tautomerase.
 
     0.932
SDF79939.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.917
SDF79884.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
 
     0.779
SDF80021.1
Nitronate monooxygenase.
  
    0.764
SDG55955.1
Acetoin utilization deacetylase AcuC.
    
  0.678
SDH31360.1
acyl-CoA thioester hydrolase.
  
     0.651
SDF79840.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
 
 
   0.643
SDF71836.1
Glyoxalase family protein.
  
 
 0.593
SDG10241.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.592
SDG12431.1
Catalase; Belongs to the catalase family.
  
 0.592
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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